| 2-D or not 2-D--is there a future for 2-D gels in proteomics? Insights from the York proteomics meeting. |
11678032 |
Proteomics |
| A database of protein expression in lung cancer. |
11721642 |
Proteomics |
| A distinct repertoire of autoantibodies in hepatocellular carcinoma identified by proteomic analysis. |
12096119 |
Mol Cell Proteomics |
| A functional annotation of subproteomes in human plasma. |
16104058 |
Proteomics |
| A meeting of minds in proteomics. |
11822353 |
Proteomics |
| A minimal critical region of the 8p22-23 amplicon in esophageal adenocarcinomas defined using sequence tagged site-amplification mapping and quantitative polymerase chain reaction includes the GATA-4 gene. |
10728696 |
Cancer Res |
| A mouse plasma peptide atlas as a resource for disease proteomics. |
18522751 |
Genome Biol |
| A mouse to human search for plasma proteome changes associated with pancreatic tumor development. |
18547137 |
PLoS Med |
| A proteomic approach to the identification of lung cancer markers. |
11790896 |
Dis Markers |
| A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoelectric focusing to study the breast cancer proteome. |
21513341 |
Anal Chem |
| A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system. |
16047307 |
Proteomics |
| Accurate molecular classification of human cancers based on gene expression using a simple classifier with a pathological tree-based framework. |
14578198 |
Am J Pathol |
| An immune response manifested by the common occurrence of annexins I and II autoantibodies and high circulating levels of IL-6 in lung cancer. |
11504947 |
Proc Natl Acad Sci U S A |
| Application of proteomics to cancer early detection. |
22157286 |
Cancer J |
| Biomedical applications of two-dimensional electrophoresis using immobilized pH gradients: current status. |
10786892 |
Electrophoresis |
| Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. |
16525410 |
Nat Biotechnol |
| Cleavage of endoplasmic reticulum proteins in hepatocellular carcinoma: Detection of generated fragments in patient sera. |
16762624 |
Gastroenterology |
| Comprehensive proteomic profiling of aldehyde dehydrogenases in lung adenocarcinoma cell lines. |
22110949 |
Int J Proteomics |
| Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. |
16396501 |
J Proteome Res |
| Concordant release of glycolysis proteins into the plasma preceding a diagnosis of ER+ breast cancer. |
22367215 |
Cancer Res |
| Confounding effects of hormone replacement therapy in protein biomarker studies. |
21037107 |
Cancer Epidemiol Biomarkers Prev |
| Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes. |
17696519 |
J Proteome Res |
| Contributions of proteome profiling to the molecular analysis of cancer. |
12625782 |
Technol Cancer Res Treat |
| Discordant protein and mRNA expression in lung adenocarcinomas. |
12096112 |
Mol Cell Proteomics |
| Discovery of cancer biomarkers through the use of mouse models. |
17320282 |
Cancer Lett |
| Disease proteomics. |
12634796 |
Nature |
| Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis. |
16117833 |
BMC Cancer |
| Emerging molecular biomarkers--blood-based strategies to detect and monitor cancer. |
21364687 |
Nat Rev Clin Oncol |
| Evaluation of known oncoantibodies, HER2, p53, and cyclin B1, in prediagnostic breast cancer sera. |
22715141 |
Cancer Prev Res (Phila) |
| Expression of matrix metalloproteinase 9 (MMP-9/gelatinase B) in adenocarcinomas strongly correlated with expression of immune response genes. |
12954092 |
In Silico Biol |
| Gene expression patterns define pathways correlated with loss of differentiation in lung adenocarcinomas. |
12681502 |
FEBS Lett |
| Gene-expression profiles predict survival of patients with lung adenocarcinoma. |
12118244 |
Nat Med |
| Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics. |
11943782 |
J Biol Chem |
| Global profiling of gene expression in cancer using genomics and proteomics. |
11804268 |
Curr Opin Mol Ther |
| Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. |
12493773 |
J Biol Chem |
| Harnessing immunity for cancer marker discovery. |
12511908 |
Nat Biotechnol |
| Harnessing the immune response for cancer detection. |
21454417 |
Cancer Epidemiol Biomarkers Prev |
| High-throughput genomic technology in research and clinical management of breast cancer. Plasma-based proteomics in early detection and therapy. |
17184556 |
Breast Cancer Res |
| Identification of 14-3-3 theta as an antigen that induces a humoral response in lung cancer. |
18089831 |
Cancer Res |
| Identification of a Specific Vimentin Isoform That Induces an Antibody Response in Pancreatic Cancer. |
18769604 |
Biomark Insights |
| Identification of androgen-regulated genes in the prostate cancer cell line LNCaP by serial analysis of gene expression and proteomic analysis. |
11721644 |
Proteomics |
| Identification of beta-tubulin isoforms as tumor antigens in neuroblastoma. |
11051243 |
Clin Cancer Res |
| Identification of tumor-associated antigens using proteomics. |
12625784 |
Technol Cancer Res Treat |
| Increased C-CRK proto-oncogene expression is associated with an aggressive phenotype in lung adenocarcinomas. |
12970743 |
Oncogene |
| Increased throughput and reduced carryover of mass spectrometry-based proteomics using a high-efficiency nonsplit nanoflow parallel dual-column capillary HPLC system. |
18512973 |
J Proteome Res |
| Innovative proteomic approaches for cancer biomarker discovery. |
17907570 |
Biotechniques |
| Intact-protein analysis system for discovery of serum-based disease biomarkers. |
21468941 |
Methods Mol Biol |
| Integral protein microarrays for the identification of lung cancer antigens in sera that induce a humoral immune response. |
17916591 |
Mol Cell Proteomics |
| Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications. |
21372808 |
Nat Protoc |
| Integrating cancer genomics and proteomics in the post-genome era. |
11788993 |
Proteomics |
| Integration of proteomics into systems biology of cancer. |
22407608 |
Wiley Interdiscip Rev Syst Biol Med |
| Isoelectric focusing nonporous RP HPLC: a two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry. |
10740846 |
Anal Chem |
| Isoform analysis of LC-MS/MS data from multidimensional fractionation of the serum proteome. |
18419151 |
J Proteome Res |
| Lung cancer signatures in plasma based on proteome profiling of mouse tumor models. |
21907921 |
Cancer Cell |
| Making sense of microarray data to classify cancer. |
14597962 |
Pharmacogenomics J |
| Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity. |
14595819 |
Proteomics |
| Microparticles from ovarian carcinomas are shed into ascites and promote cell migration. |
22315094 |
Int J Gynecol Cancer |
| Mining gene expression databases for association rules. |
12499296 |
Bioinformatics |
| Mining the plasma proteome for cancer biomarkers. |
18385731 |
Nature |
| Mining the plasma proteome for disease applications across seven logs of protein abundance. |
21062094 |
J Proteome Res |
| Molecular analysis of cancer using DNA and protein microarrays. |
12908549 |
Adv Exp Med Biol |
| Molecular profiling of pancreatic adenocarcinoma and chronic pancreatitis identifies multiple genes differentially regulated in pancreatic cancer. |
12750293 |
Cancer Res |
| Molecular profiling of the immune response in colon cancer using protein microarrays: occurrence of autoantibodies to ubiquitin C-terminal hydrolase L3. |
14595809 |
Proteomics |
| Mouse model of human ovarian endometrioid adenocarcinoma based on somatic defects in the Wnt/beta-catenin and PI3K/Pten signaling pathways. |
17418409 |
Cancer Cell |
| Multi-dimensional liquid phase based separations in proteomics. |
12659729 |
J Chromatogr B Analyt Technol Biomed Life Sci |
| Occurrence of autoantibodies to annexin I, 14-3-3 theta and LAMR1 in prediagnostic lung cancer sera. |
18794547 |
J Clin Oncol |
| Operomics: integrated genomic and proteomic profiling of cells and tissues. |
15251063 |
Brief Funct Genomic Proteomic |
| Operomics: molecular analysis of tissues from DNA to RNA to protein. |
11097332 |
Clin Chem Lab Med |
| Overexpression of oncoprotein 18 correlates with poor differentiation in lung adenocarcinomas. |
12644570 |
Mol Cell Proteomics |
| Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. |
16104056 |
Proteomics |
| Plasma proteome profiles associated with inflammation, angiogenesis, and cancer. |
21589862 |
PLoS One |
| Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells. |
18311905 |
J Proteome Res |
| Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. |
12844362 |
Genome Biol |
| Profiling of the cell surface proteome. |
14625857 |
Proteomics |
| Protein based microarrays: a tool for probing the proteome of cancer cells and tissues. |
11721639 |
Proteomics |
| Protein profiles associated with survival in lung adenocarcinoma. |
14573703 |
Proc Natl Acad Sci U S A |
| Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma. |
12192603 |
Neoplasia |
| Proteomic analysis of eIF-5A in lung adenocarcinomas. |
12687616 |
Proteomics |
| Proteomic analysis of lung adenocarcinoma: identification of a highly expressed set of proteins in tumors. |
12114434 |
Clin Cancer Res |
| Proteomic approaches for cancer biomarker discovery in plasma. |
17941811 |
Expert Rev Proteomics |
| Proteomic approaches within the NCI early detection research network for the discovery and identification of cancer biomarkers. |
11708463 |
Ann N Y Acad Sci |
| Proteomics approaches to uncover the repertoire of circulating biomarkers for breast cancer. |
12882525 |
J Mammary Gland Biol Neoplasia |
| Proteomics in early detection of cancer. |
11568117 |
Clin Chem |
| Proteomics-based identification of protein gene product 9.5 as a tumor antigen that induces a humoral immune response in lung cancer. |
11691811 |
Cancer Res |
| Proteomics-based identification of RS/DJ-1 as a novel circulating tumor antigen in breast cancer. |
11705844 |
Clin Cancer Res |
| Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS. |
16889424 |
J Proteome Res |
| RANTES expression is a predictor of survival in stage I lung adenocarcinoma. |
12473593 |
Clin Cancer Res |
| Targets of the tumor suppressor miR-200 in regulation of the epithelial-mesenchymal transition in cancer. |
21987723 |
Cancer Res |
| The gene for the axonal cell adhesion molecule TAX-1 is amplified and aberrantly expressed in malignant gliomas. |
11280781 |
Cancer Res |
| The hepatocyte nuclear factor 3 alpha gene, HNF3alpha (FOXA1), on chromosome band 14q13 is amplified and overexpressed in esophageal and lung adenocarcinomas. |
12234996 |
Cancer Res |
| The Human Proteome Organization: a mission to advance proteome knowledge. |
12169681 |
Mol Cell Proteomics |
| The major CD9 and CD81 molecular partner. Identification and characterization of the complexes. |
11278880 |
J Biol Chem |
| Transforming properties of a Q18-->E mutation of the microtubule regulator Op18. |
12242154 |
Cancer Cell |
| Tumor microenvironment-derived proteins dominate the plasma proteome response during breast cancer induction and progression. |
21653680 |
Cancer Res |
| Two messenger RNAs and five isoforms for Po66-CBP, a galectin-8 homolog in a human lung carcinoma cell line. |
11675018 |
Gene |
| Ubiquitin COOH-terminal hydrolase 1: a biomarker of renal cell carcinoma associated with enhanced tumor cell proliferation and migration. |
17200335 |
Clin Cancer Res |
| Unraveling the complex proteome for biomarker discovery in gastrointestinal and liver diseases. |
17064703 |
Gastroenterology |
| Virtual genome scan: a tool for restriction landmark-based scanning of the human genome. |
11483587 |
Genome Res |
