Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.


The open-source Computational Proteomics Analysis System (CPAS) contains an entire data analysis and management pipeline for Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) proteomics, including experiment annotation, protein database searching and sequence management, and mining LC-MS/MS peptide and protein identifications. CPAS architecture and features, such as a general experiment annotation component, installation software, and data security management, make it useful for collaborative projects across geographical locations and for proteomics laboratories without substantial computational support.

  • Bellew M
  • Detter A
  • Eng J
  • Faca V
  • Fang R
  • Fitzgibbon M
  • Gafken P
  • Hanash S
  • Holzman T
  • Hussey P
  • Igra M
  • Lin CW
  • Maclean B
  • McIntosh MW
  • Paulovich A
  • Rauch A
  • States D
  • Whiteaker J
  • Zhang H
PubMed ID
Appears In
J Proteome Res, 2006, 5 (1)