Prostate Specimen Reference Sets
| Organ | Protocol ID | Reference set title | Cases | Controls | Total participants | Participant groups | Specimen type | Number of specimens | Volume range (mL) | Specimens at NCI-F? | Discovery set? | Follow-up data? | Pathology | Image files avail? | Incident cancer? |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Prostate | 341 | 559 | 900 | | Serum | 16,778 | 0.075–0.5 | ✓ | | | | | | ||
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|
| | | | Buffy coat | 864 | 0.05–0.5 | | | | | | |
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|
| | | | Whole urine | 771 | 1.2–5.0 | | | | | | |
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|
| | | | EDTA plasma | 13,137 | 0.1 | | | | | | |
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|
| | | | Sediment/RNALater | 738 | 0.035–1.5 | | | | | | |
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|
| | | | Sediment/PBS | 486 | 0.01–0.4 | | | | | | |
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|
| | | | Supernatant | 1,493 | 2.5–50 | | | | | | |
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|
| | | | PAXGene | 1,716 | "tubes" | | | | | | |
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|
| | | | | | | | | | | | |
| Prostate | PROS-REF |
373 | 290 | 663 | | Serum | 23,090 | 0.1–0.5 | | ✓ | | ✓ | | | |
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|
| | | | EDTA plasma | 8,805 | 0.1–0.5 | | | | | | |
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|
| | | | Citrate plasma | 7,435 | 0.1–0.5 | | | | | | |
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|
| | | | EDTA cellular fraction | 4,074 | 0.1–0.5 | | | | | | |
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|
| | | | Citrate cellular fraction | 2,216 | 0.1–0.5 | | | | | | |
| Prostate | 382 |
196 | 101 | 297 | Cases and controls are defined by the overall Gleason score determined from prostatectomy. Controls had a score of 6. Cases had a score greater than 6. | Buffy coat | 295 | 0.5 | Yes (blood & urine) No (FFPE Biopsy & Prostatectomy Tissue distributed | | ✓ | ✓ | | ✓ | |
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| | | | DNA | 190 | 0.05 | | | | | | |
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| | | | EDTA plasma | 2860 | 0.2 | | | | | | |
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| | | | FFPE biopsy tissue | 815 | | | | | | | |
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| | | | FFPE prostatectomy tissue | 280 | | | | | | | |
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| | | | Raw urine | 263 | 1.0 | | | | | | |
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| | | | Sediment/PBS | 86 | 0.05 | | | | | | |
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| | | | Sediment/RNAlater | 126 | 0.25 | | | | | | |
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| | | | Serum | 5158 | 0.1–0.25 | | | | | | |
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| | | | Tissue slide | 3177 | | | | | | | |
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| | | | Urine sediment | 142 | 0.05 | | | | | | |
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| | | | Urine supernatant | 868 | 0.5–5.0 | | | | | | |
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| | | | Whole blood | 296 | 2.0 | | | | | | |
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| | | | Whole urine | 996 | 5.0 | | | | | | |